Thousands of passengers have been left stranded after a lightning strike left the airport's fuelling system temporarily unavailable.
Dozens of planes at the airport in Essex were forced to remain grounded leading to scenes of chaos at the airport.
Passengers have reported delays of more than three hours, with many stuck waiting on aircraft with limited information.
Stansted arrivals have now been diverted to airports more than 100 miles away as the disruption continues.
Engineers fixed the system shortly before 9am but Stansted bosses have warned that flights are subject to delays and cancellations as the airport gets back to normal.
The chaos comes after the UK was struck by more than 70,000 bolts of lightning overnight, as the “mother of all thunderstorms” rolled out across Southern England bringing with it torrential downpours.
Stansted Airport – Cancelled Flights
8.30am Bratislava FR2314
8.45am Pisa FR584
11.20am Poznan FR2336
11.25am Aarhus FR712
11.40am Vasteras FR682
11.55am Perpignan FR936
12.1pm Katowice FR8266
12.15pm Bergerac FR8592
1.15pm Dortmund FR1788
12.05pm Dinard Brittany FR514
Flooding and further lightning strikes over the coming 24 hours could see delays and cancellations on train and bus routes across the UK, with the chance of power outages in some parts.
Met Office yellow weather warnings remain in place today until at least 6am tomorrow, indicating heavy rain across the central and southern parts of England and all of Wales, with a possible danger to life.
Homes and business risk severe water damage from floodwater, lightning strikes, hail and strong winds.
Torrential rain at Kew Gardens, in south-west London, saw more than half an inch of rain fall in an hour, and the London Fire Brigade confirmed it has taken more than 500 weather-related called overnight, almost all for flooding.
A cluster of 17 flood alerts has been issued for parts of the Thames Valley, while West Midlands and Bedfordshire fire services warned motorists of the risks of driving on flood-hit roads.
The Met Office has warned that spray and sudden flooding could lead to difficult driving conditions, with some communities at risk of being cut off completely due to flooding.
In Warwickshire, the fire service said five properties were struck by lightning in the early hours of Sunday, while in Dawlish, Devon a telephone box burst into flames after a BT pole was hit on Saturday evening.
Western Power Distribution said nearly 1,000 properties had been left without power across the Midlands, with the majority of outages down to lightning.
Met Office meteorologist Greg Dewhurst said that while temperatures were likely to remain in the high 20s, possibly reaching 30C tomorrow, there was a high risk of torrential rain across most of the UK today.
Speaking to Sun Online, he said: Weather warnings are in place from Blackpool and the River Hunt, stretching southwards covering the central and southern parts of England and Wales.
“The worst of the rain will batter the country today, with coastal areas remaining wet tomorrow.
“Inland, it will get much drier and we are likely to see temperatures reach 29C or 30C on Bank Holiday Monday.
“It’s going to remain balmy until at least the first week of June, with temperatures remaining in the mid 20s.
Social media was flooded with images of the spectacular electric storm that lit up skies across the capital overnight.
Photos showed the iconic Shard building and Wembley Stadium’s famous arch directly struck by bolts of lightning.
BBC weatherman Tomasz Schafernaker tweeted: "Mother of all #thunderstorms now over London. Oh boy! This UTTERLY INSANE. I've never seen a storm with such frequent lightning in my life I don't think. Mostly sheet lightning and not too loud but flashes are spectacular."
James Brewin captured the moment Big Ben and Westminster were illuminated by a flash of lightning, describing it as "London in daylight at midnight for a split second".
Photographer and journalist Andrew Lanxon Hoyle shared an image of the Suleymaniye Mosque in Dalston, east London, lit from behind by a brilliant fork of lightning, tweeting: "The lightning storm over London right now is utterly INTENSE."
Pamelasaurusrex shared a photo on Instagram of two people running for shelter outside King's Cross Station as a lightning bolt arced across the sky over nearby St Pancras.
Samuel Wilkinson captured the split-second lightning shot toward the earth with The Shard skyscraper below, while the RNLI at Tower Bridge shared a photo of the view over the South Bank as the sky lit up.
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